#Installation

#With jvc

jvc add @deckyard/bioinformatics

or declare it in your project's deck.toml and run jvc install:

[decks]
"@deckyard/bioinformatics" = ">=0.1.0"

jvc vendors the deck's src/ to vendor/deckyard/bioinformatics/. Import it by its scoped name; the trailing slash resolves to the entry module:

import "@deckyard/bioinformatics/" as bioseq;

#Without jvc

Unpack the src/ subtree of a release archive (deckyard-bioinformatics-<version>.tar.gz) into vendor/deckyard/bioinformatics/, or import a checkout directly. There is no build step:

git clone https://github.com/deckyard/deck-bioinformatics

import "./deck-bioinformatics/src/bioinformatics.j" as bioseq;

The examples in this repository import ../src/bioinformatics.j the same way.

#Requirements

The floor comes from the math functions the thermodynamic and pI formulas need (math.ln, math.pow). The deck also uses strings, maps, convert, binary and io.

#Checking it works

From a checkout:

jennifer test src/bioinformatics_test.j   # fixtures are embedded, no files needed
jennifer run examples/transforms.j        # needs no testdata/